HPC 관련 내용 정리

Perl 사용 시 ""all" is not exported by the List::Util module" 오류가 발생 할 경우는 "List::Util" Perl module 상위 버전을 설치해서 사용 한다.

[설치 과정]

[사용을 위한 환경설정]

아래 내용을 .bashrc 와 같은 환경설정 파일에 내용을 추가 한다.

- 오류 내용 : NameError: name 'file' is not defined
- 오류 원인 및 해결 방법 : 
   python 2.x 버전에서 사용하던 file() 은 삭제 되었습니다.
   Python 3 버전에서는 file() 대신 open(filename, mode)을 사용하세요.
- 참고 : https://docs.python.org/release/3.0/whatsnew/3.0.html#builtins
       https://docs.python.org/release/3.0/library/functions.html#open

시간이 10시6분34초 인 경우

=TEXT("10:06:34","[s]")

excel B2 시간에서 B1 시간을 빼서 초로 변환하는 경우

=TEXT(B2-B1,"[s]")

MAC XQuartz 를 이용하여 OpenGL 라이브러리 사용 시 오류가 발생하면

터미널을 열어서 [해결방법]을 실행 후 다시 ssh 연결 

[해결 방법]

$ defaults write org.macosforge.xquartz.X11 enable_iglx -bool true

[오류 내용]

Gdk-ERROR **: The program '<PROGRAM>' received an X Window System error.

This probably reflects a bug in the program.

The error was '<SOME_ERROR>'.

 (Details: serial <AA> error_code <B> request_code <CC> minor_code <D>)

 (Note to programmers: normally, X errors are reported asynchronously;

  that is, you will receive the error a while after causing it.

   To debug your program, run it with the --sync command line

  option to change this behavior. You can then get a meaningful

  backtrace from your debugger if you break on the gdk_x_error() function.)

./configure --prefix=/apps/common/antlr/2.7.7

make

make install

[오류 내용]

In file included from /apps/wa/build/common/antlr-2.7.7/lib/cpp/src/../../../lib/cpp/src/CharScanner.cpp:10:0:

/apps/wa/build/common/antlr-2.7.7/scripts/../lib/cpp/antlr/CharScanner.hpp:474:30: error: ‘EOF’ was not declared in this scope

  static const int EOF_CHAR = EOF;

                              ^

/apps/wa/build/common/antlr-2.7.7/scripts/../lib/cpp/antlr/CharScanner.hpp: In member function ‘bool antlr::CharScannerLiteralsLess::operator()(const string&, const string&) const’:

/apps/wa/build/common/antlr-2.7.7/scripts/../lib/cpp/antlr/CharScanner.hpp:565:41: error: ‘strcasecmp’ was not declared in this scope

   return (strcasecmp(x.c_str(),y.c_str())<0);

                                         ^

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

                      >> E R R O R <<

============================================================

g++ -O2 -DNDEBUG -felide-constructors -pipe -c  -I . -I /apps/wa/build/common/antlr-2.7.7/scripts/../lib/cpp /apps/wa/build/common/antlr-2.7.7/lib/cpp/src/../../../lib/cpp/src/CharScanner.cpp

vi lib/cpp/antlr/CharScanner.hpp

[변경 전]

#include <antlr/config.hpp>

[변경 후]

#include <fstream>

#include <strings.h>  

#include <antlr/config.hpp>

#ifndef EOF

    #define EOF     std::ifstream::traits_type::eof()

#endif

RedHat 5.3 OS 에 GCC 6.1 설치 과정 기록

1. binutils-2.30 install

./configure --prefix=/home01/sunlsy/tachyon2

make

make install

export PATH=/home01/sunlsy/tachyon2/bin:$PATH

export LD_LIBRARY_PATH=/home01/sunlsy/tachyon2/lib:$LD_LIBRARY_PATH

2. gmp-6.1.0

./configure --prefix=/home01/sunlsy/tachyon2

make

make install

3. mpfr-3.1.6

./configure --prefix=/home01/sunlsy/tachyon2 --with-gmp-include=/home01/sunlsy/tachyon2/include --with-gmp-lib=/home01/sunlsy/tachyon2/lib

make

make install

4. mpc-1.0.3

./configure --prefix=/home01/sunlsy/tachyon2 --with-mpfr=/home01/sunlsy/tachyon2 --with-gmp=/home01/sunlsy/tachyon2

make

make install

export PATH=/applic/common/utils/bin:$PATH

5. gcc-6.1.0

./configure --prefix=/home01/sunlsy/tachyon2  \

--enable-shared --enable-threads=posix \

--enable-clocale=gnu --enable-languages=c,c++,fortran,lto \

--with-mpc=/home01/sunlsy/tachyon2 --with-mpfr=/home01/sunlsy/tachyon2 \

--with-gmp=/home01/sunlsy/tachyon2

make

make install 

[오류 내용]

error: more than one instance of overloaded function "MPI::Init_thread" has "C" linkage

[해결 방법]

"-DMPICH_SKIP_MPICXX" 를 포함 시켜서 컴파일

[오류 내용]

/usr/lib/../lib64/libreadline.so: undefined reference to `tgetstr'

/usr/lib/../lib64/libreadline.so: undefined reference to `tputs'

/usr/lib/../lib64/libreadline.so: undefined reference to `BC'

/usr/lib/../lib64/libreadline.so: undefined reference to `tgetent'

/usr/lib/../lib64/libreadline.so: undefined reference to `tgetflag'

/usr/lib/../lib64/libreadline.so: undefined reference to `tgoto'

/usr/lib/../lib64/libreadline.so: undefined reference to `UP'

/usr/lib/../lib64/libreadline.so: undefined reference to `tgetnum'

/usr/lib/../lib64/libreadline.so: undefined reference to `PC'

[해결 방법]

컴파일 시 "-lreadline" 를 "-lreadline -lcurses" 로 변경해서 사용

OpenFOAM 4.1 source 버전으로 설치 하는 방법에 대하여 소개 한다.

1. 설치 환경

2. 환경 설정 방법

[ 환경 설정 ]

3. 설치

오류 내용 

ld: cannot find -lfl

해결 방법

flex-devel 설치